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Prof Peter Lockhart

Professor of Molecular Evolution

Doctoral Supervisor
School of Agriculture and Environment

Peter's reserach interests concern adaptation and plasticity of animal and plant populations, invertebrates from wetlands in Fiji and Samoa, and bioactive bacteria lurking in the caves of Oceania. His scientific achievements earned him an Alexander von Humboldt Research Fellowship and New Zealand Royal Society Fellowship.

Professional

Contact details

  • Ph: X 84734
    Location: 5.07, Science Tower D
    Campus: Hokowhitu

Certifications and Registrations

  • Licence, Supervisor, 黑料网

Research Expertise

Research Interests

Genomics, phylogenetics, metagenomics and environmental monitoring, hybridization and climate change adaptation

Thematics

Resource Development and Management, Health and Well-being, Future Food Systems

Area of Expertise

Field of research codes
Biological Sciences (060000): Evolutionary Biology (060300): Evolutionary Impacts of Climate Change (060306): Genetics (060400): Genomics (060408): Infectious Agents (060502): Microbiology (060500): Plant Biology (060700): Plant Cell and Molecular Biology (060702)

Keywords

Genomics, phylogenetics, metagenomics and environmental monitoring, hybridization and climate change adaptation

Research Projects

Current Projects

Project Title: Searching for novel antimicrobials

With Pacific island researchers, we have recently reported successful culturing of bioactive bacteria, including Streptomyces and rare Actinomycetes from a limestone cave in Fiji. We have shown that the bacteria cultured are only a small fraction of the diversity present in the cave. Using portable DNA and RNA sequencing technology we will genetically screen the bacteria already cultured for novel antimicrobials. We will also use this technology to directly look for novel bioactivity in further biological samples taken from the cave. To isolate and culture bioactive bacteria, we are using pre-treatments that select against fast-growing bacteria and selective growing conditions that mimic the cave environment. We do this because the World Health Organisation has recently emphasised the importance of identifying novel antibiotics to combat the frightening rise of multidrug-resistant micro-organisms. This emerging global problem of Antimicrobial Resistance has the potential to cripple the health system in New Zealand.
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Date Range: 2023 - 2025

Funding Body: Health Research Council of New Zealand

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Project Title: Enabling in-field DNA diagnosis of pests and pathogens in agriculture, horticulture and viticultures

Date Range: 2015 - 2022

Funding Bodies: Ministry of Business, Innovation and Employment; Massey Ventures Ltd

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Completed Projects

Project Title: Improved modelling in evolutionary transcriptomics and proteomics will advance understanding of plant adaptation

Date Range: 2018 - 2022

Funding Body: Royal Society of New Zealand

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Project Title: Climate Change Adaptation in Alpine and Sub-Antartic Island Plants

Date Range: 2016 - 2018

Funding Body: Ministry of Business, Innovation and Employment

Project Team:

Project Title: Tracing the influence of cultivation on the whakapa of endemic NZ plants with molecular markers

The domestication of plants and animals was the most important development in human history during the past 13 000 years. Most crops are thousands of years old, with aspects of their initial domestication indeterminable. However, the relatively recent settlement of New Zealand by Maori provides a unique opportunity to investigate the early phase of crop domestication. We shall use genetic analyses of four endemic New Zealand plants cultivated by Maori to examine recent domestication: karaka, rengarenga, whau, and coastal kowhai. Prior to human arrival these species are thought to have been restricted to the northern North Island. Their occurrence in the southern North Island, the South Island, and distant Chatham and Kermadec Island groups, which is strongly associated with M?ori archaeological sites, is considered to result from translocations as part of their cultivation. Our analyses will reveal information about the number of times each species was brought into cultivation and the way in which domestication has reduced genetic diversity in the cultivated populations. Our genetic data, combined with traditional oral histories, where available, will reflect and illuminate pre-European Maori settlement routes and mobility.
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Date Range: 2008 - 2011

Funding Body: Marsden Fund - Full

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Research Outputs

Journal

Liu, Y., Sun, S., Zhang, Y., Song, M., Tian, Y., Lockhart, PJ., . . . Dang, Z. (2024). Integrated transcriptome and proteome analyses reveal potential mechanisms in Stipa breviflora underlying adaptation to grazing. Grassland Research. 3(1), 1-17
[Journal article]Authored by: Lockhart, P.
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Dang, Z., Li, J., Liu, Y., Song, M., Lockhart, PJ., Tian, Y., . . . Wang, Q. (2024). RADseq-based population genomic analysis and environmental adaptation of rare and endangered recretohalophyte Reaumuria trigyna. Plant Genome. 17(1)
[Journal article]Authored by: Lockhart, P.
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Hulme, PE., Beggs, JR., Binny, RN., Bray, JP., Cogger, N., Dhami, MK., . . . Lockhart, PJ. (2023). Emerging advances in biosecurity to underpin human, animal, plant, and ecosystem health. iScience. 26(9)
[Journal article]Authored by: Cogger, N., French, N., Lockhart, P.
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Rashni, B., Brown, KT., McLenachan, PA., Lockhart, PJ., Southgate, PC., & Lal, MM. (2023). Leech breach: a first record of the invasive freshwater leech Helobdella europaea (Hirudinea: Glossiphoniidae) in Fiji. Pacific Conservation Biology.
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Cliff, A., Guieysse, B., Brown, N., Lockhart, P., Dubreucq, E., & Plouviez, M. (2023). Polyphosphate synthesis is an evolutionarily ancient phosphorus storage strategy in microalgae. Algal Research. 73
[Journal article]Authored by: Brown, N., Lockhart, P.
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Doyle, E., Blanchon, D., Wells, S., de Lange, P., Lockhart, P., Waipara, N., . . . Berry, TA. (2023). Internal Transcribed Spacer and 16S Amplicon Sequencing Identifies Microbial Species Associated with Asbestos in New Zealand. Genes. 14(3)
[Journal article]Authored by: Lockhart, P.
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Pearson, SM., Griffiths, AG., Maclean, P., Larking, AC., Hong, SW., Jauregui, R., . . . Faville, MJ. (2023). Outlier analyses and genome-wide association study identify glgC and ERD6-like 4 as candidate genes for foliar water-soluble carbohydrate accumulation in Trifolium repens. Frontiers in Plant Science. 13
[Journal article]Authored by: Lockhart, P., Tate, J.
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Pipite, A., Lockhart, PJ., McLenachan, PA., Christi, K., Kumar, D., Prasad, S., . . . Subramani, R. (2022). Isolation, antibacterial screening, and identification of bioactive cave dwelling bacteria in Fiji. Frontiers in Microbiology. 13
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Ehoche, OG., Arojju, SK., Cousins, G., O'Connor, JR., Maw, B., Tate, JA., . . . Griffiths, AG. (2022). Estimation of quantitative genetic parameters for dry matter yield and vegetative persistence-related traits in a white clover training population. Crop Science. 62(6), 2169-2185
[Journal article]Authored by: Lockhart, P., Tate, J.
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Winkworth, RC., Neal, G., Ogas, RA., Nelson, BCW., McLenachan, PA., Bellgard, SE., . . . Lockhart, PJ. (2022). Comparative Analyses of Complete Peronosporaceae (Oomycota) Mitogenome Sequences - Insights into Structural Evolution and Phylogeny. Genome Biology and Evolution. 14(4)
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Undin, M., Lockhart, PJ., Hills, SFK., & Castro, I. (2020). Genetic Rescue and the Plight of Ponui Hybrids. Frontiers in Conservation Science. 1
[Journal article]Authored by: Castro, I., Hills, S., Lockhart, P.
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Undin, M., Lockhart, PJ., Hills, SFK., Armstrong, DP., & Castro, I. (2021). Mixed Mating in a Multi-Origin Population Suggests High Potential for Genetic Rescue in North Island Brown Kiwi, Apteryx mantelli. Frontiers in Conservation Science. 2
[Journal article]Authored by: Castro, I., Hills, S., Lockhart, P.
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Dang, Z., Jia, Y., Tian, Y., Li, J., Zhang, Y., Huang, L., . . . Li, FY. (2021). Transcriptome-wide gene expression plasticity in stipa grandis in response to grazing intensity differences. International Journal of Molecular Sciences. 22(21)
[Journal article]Authored by: Lockhart, P.
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Aung, HL., Nyunt, WW., Fong, Y., Biggs, PJ., Winkworth, RC., Lockhart, PJ., . . . Aung, ST. (2021). Genomic profi ling of mycobacterium tuberculosis strains, myanmar. Emerging Infectious Diseases. 27(11), 2847-2855
[Journal article]Authored by: Biggs, P., Lockhart, P.
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Winkworth, RC., Bellgard, SE., McLenachan, PA., & Lockhart, PJ. (2021). The mitogenome of Phytophthora agathidicida: Evidence for a not so recent arrival of the "kauri killing" Phytophthora in New Zealand. PLoS ONE. 16(5 May)
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Undin, M., Hills, SFK., Lockhart, PJ., & Castro, I. (2021). Gaps in genetic knowledge affect conservation management of kiwi (Apteryx) species. Ibis. 163(4), 1155-1174
[Journal article]Authored by: Castro, I., Hills, S., Lockhart, P.
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Abdullah, ., Mehmood, F., Shahzadi, I., Ali, Z., Islam, M., Naeem, M., . . . Waheed, MT. (2021). Correlations among oligonucleotide repeats, nucleotide substitutions, and insertion–deletion mutations in chloroplast genomes of plant family Malvaceae. Journal of Systematics and Evolution. 59(2), 388-402
[Journal article]Authored by: Lockhart, P.
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Ahmed, I., Lockhart, PJ., Agoo, EMG., Naing, KW., Nguyen, DV., Medhi, DK., . . . Matthews, PJ. (2020). Evolutionary origins of taro (Colocasia esculenta) in Southeast Asia. Ecology and Evolution. 10(23), 13530-13543
[Journal article]Authored by: Lockhart, P.
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Dang, Z., Huang, L., Jia, Y., Lockhart, PJ., Fong, Y., & Tian, Y. (2020). Identification of genic SSRs provide a perspective for studying environmental adaptation in the endemic shrub Tetraena mongolica. Genes. 11(3)
[Journal article]Authored by: Lockhart, P.
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Winkworth, RC., Nelson, BCW., Bellgard, SE., Probst, CM., McLenachan, PA., & Lockhart, PJ. (2020). A LAMP at the end of the tunnel: A rapid, field deployable assay for the kauri dieback pathogen, Phytophthora agathidicida. PLoS ONE. 15(1)
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Wolf, PG., Rowe, CA., Kinosian, SP., Der, JP., Lockhart, PJ., Shepherd, LD., . . . Thomson, JA. (2019). Worldwide relationships in the fern genus Pteridium (bracken) based on nuclear genome markers. American Journal of Botany. 106(10), 1365-1376
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Ginigini, J., Lecellier, GJ., Nicolas, M., Nour, M., Hnawia, E., Lebouvier, N., . . . Raharivelomanana, P. (2019). Chemodiversity of Calophyllum inophyllum L. oil bioactive components related to their specific geographical distribution in the South Pacific region. PeerJ. 2019(5)
[Journal article]Authored by: Lockhart, P.
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Dang, Z., McLenachan, PA., Lockhart, PJ., Waipara, N., Er, O., Reynolds, C., . . . Blanchon, D. (2019). Metagenome profiling identifies potential biocontrol agents for selaginella kraussiana in New Zealand. Genes. 10(2)
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Htun, KS., Fong, Y., Kyaw, AA., Aung, ST., Oo, KZ., Zaw, T., . . . Hlaing, TM. (2018). Microbiome dataset from the upper respiratory tract of patients living with HIV, HIV/TB and TB from Myanmar. Data in Brief. 21, 354-357
[Journal article]Authored by: Lockhart, P.
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Kapust, N., Nelson-Sathi, S., Schönfeld, B., Hazkani-Covo, E., Bryant, D., Lockhart, PJ., . . . Martin, WF. (2018). Failure to recover major events of gene flux in real biological data due to method misapplication. Genome Biology and Evolution. 10(5), 1198-1209
[Journal article]Authored by: Lockhart, P.
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Voelckel, C., Gruenheit, N., & Lockhart, P. (2017). Evolutionary Transcriptomics and Proteomics: Insight into Plant Adaptation. Trends in Plant Science. 22(6), 462-471
[Journal article]Authored by: Lockhart, P.
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Lehnebach, CA., Winkworth, RC., Becker, M., Lockhart, PJ., & Hennion, F. (2017). Around the pole: evolution of sub-Antarctic Ranunculus. Journal of Biogeography. 44(4), 875-886
[Journal article]Authored by: Lockhart, P.
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Yabaki, M., Winkworth, RC., Mclenachan, PA., Aalbersberg, W., Winder, L., Trewick, SA., . . . Lockhart, PJ. (2016). Placing the Fijian Honeyeaters within the meliphagid radiation: Implications for origins and conservation. Pacific Conservation Biology. 22(3), 262-271
[Journal article]Authored by: Lockhart, P., McLenachan, P., Trewick, S.
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Woodhams, MD., Lockhart, PJ., & Holland, BR. (2016). Simulating and summarizing sources of gene tree incongruence. Genome Biology and Evolution. 8(5), 1299-1315
[Journal article]Authored by: Lockhart, P.
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Shepherd, LD., De Lange, PJ., Cox, S., McLenachan, PA., Roskruge, NR., & Lockhart, PJ. (2016). Evidence of a strong domestication bottleneck in the recently cultivated New Zealand endemic root crop, Arthropodium cirratum (Asparagaceae). PLoS ONE. 11(3)
[Journal article]Authored by: Lockhart, P., McLenachan, P., Roskruge, N.
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Hoffmann, A., Griffin, P., Dillon, S., Catullo, R., Rane, R., Byrne, M., . . . Sgrò, C. (2015). A framework for incorporating evolutionary genomics into biodiversity conservation and management. Climate Change Responses. 2(1)
[Journal article]Authored by: Lockhart, P.
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Goremykin, VV., Nikiforova, SV., Cavalieri, D., Pindo, DM., & Lockhart, P. (2015). The root of flowering plants and total evidence. Systematic Biology. 64(5), 879-891
[Journal article]Authored by: Lockhart, P.
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Atherton, RA., Lockhart, PJ., Mclenachan, PA., De Lange, PJ., Wagstaff, SJ., & Shepherd, LD. (2015). A molecular investigation into the origin and relationships of karaka/ko¯pi (Corynocarpus laevigatus) in New Zealand. Journal of the Royal Society of New Zealand. 45(4), 212-220
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Joly, S., Bryant, D., & Lockhart, PJ. (2015). Flexible methods for estimating genetic distances from single nucleotide polymorphisms. Methods in Ecology and Evolution. 6(8), 938-948
[Journal article]Authored by: Lockhart, P.
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Ku, C., Nelson-Sathi, S., Roettger, M., Sousa, FL., Lockhart, PJ., Bryant, D., . . . Martin, WF. (2015). Endosymbiotic origin and differential loss of eukaryotic genes. Nature. 524(7566), 427-432
[Journal article]Authored by: Lockhart, P.
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Marshall, CW., Chagné, D., Deusch, O., Gruenheit, N., McCallum, J., Bergin, D., . . . Wilcox, PL. (2015). A DNA-based diagnostic for differentiating among New Zealand endemic Podocarpus. Tree Genetics and Genomes. 11(4)
[Journal article]Authored by: Lockhart, P.
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Joly, S., Bryant, D., & Lockhart, PJ. (2015). Flexible methods for estimating genetic distances from single nucleotide polymorphisms. Methods in Ecology and Evolution.
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Larkum, AWD., Becker, M., & Penny, D. (2014). We are Still Learning about the Nature of Species and Their Evolutionary Relationships. Annals of the Missouri Botanical Garden. 100(1-2), 6-13
[Journal article]Authored by: Lockhart, P.
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Joly, S., Heenan, PB., & Lockhart, PJ. (2014). Species radiation by niche shifts in new zealand's rockcresses (Pachycladon, brassicaceae). Systematic Biology. 63(2), 192-202
[Journal article]Authored by: Lockhart, P.
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Becker, M., Gruenheit, N., Steel, M., Voelckel, C., Deusch, O., Heenan, PB., . . . Lockhart, PJ. (2013). Hybridization may facilitate in situ survival of endemic species through periods of climate change. Nature Climate Change. 3(12), 1039-1043
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Ahmed, I., Matthews, PJ., Biggs, PJ., Naeem, M., Mclenachan, PA., & Lockhart, PJ. (2013). Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies of Colocasia esculenta (L.) Schott (Araceae) and closely related taxa. Molecular Ecology Resources. 13(5), 929-937
[Journal article]Authored by: Biggs, P., Lockhart, P., McLenachan, P.
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Wang, J., McLenachan, PA., Biggs, PJ., Winder, LH., Schoenfeld, BIK., Narayan, VV., . . . Lockhart, PJ. (2013). Environmental bio-monitoring with high-throughput sequencing. Briefings in Bioinformatics. 14(5), 575-588
[Journal article]Authored by: Biggs, P., Lockhart, P., McLenachan, P.
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Dagan, T., Roettger, M., Stucken, K., Landan, G., Koch, R., Major, P., . . . Martin, WF. (2013). Genomes of stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids. Genome Biology and Evolution. 5(1), 31-44
[Journal article]Authored by: Lockhart, P.
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Goremykin, VV., Nikiforova, SV., Biggs, PJ., Zhong, B., Delange, P., Martin, W., . . . Lockhart, PJ. (2013). The evolutionary root of flowering plants. Systematic Biology. 62(1), 50-61
[Journal article]Authored by: Biggs, P., Lockhart, P., McLenachan, P.
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Ahmed, I., Biggs, PJ., Matthews, PJ., Collins, LJ., Hendy, MD., & Lockhart, PJ. (2012). Mutational dynamics of aroid chloroplast genomes. Genome Biology and Evolution. 4(12), 1316-1323
[Journal article]Authored by: Biggs, P., Lockhart, P.
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Voelckel, C., Gruenheit, N., Biggs, P., Deusch, O., & Lockhart, P. (2012). Chips and tags suggest plant-environment interactions differ for two alpine Pachycladon species. BMC Genomics. 13(1)
[Journal article]Authored by: Biggs, P., Lockhart, P.
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Singh, SK., Khurma, UR., & Lockhart, PJ. (2012). Distribution and diversity of root-knot nematodes in agricultural areas of Fiji. Nematropica. 42(1), 16-25
[Journal article]Authored by: Lockhart, P.
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Goremykin, VV., Lockhart, PJ., Viola, R., & Velasco, R. (2012). The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants. Plant Journal. 71(4), 615-626
[Journal article]Authored by: Lockhart, P.
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Singh, R., Narayan, V., Mclenachan, P., Winkworth, RC., Mitra, S., Lockhart, PJ., . . . Rao, D. (2012). Detection and diversity of pathogenic Vibrio from Fiji. Environmental Microbiology Reports. 4(4), 403-411
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Goremykin, VV., Lockhart, PJ., Viola, R., & Velasco, R. (2012). The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants. Plant Journal.
[Journal article]Authored by: Lockhart, P.
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Gruenheit, N., Deusch, O., Esser, C., Becker, M., Voelckel, C., & Lockhart, P. (2012). Cutoffs and k-mers: Implications from a transcriptome study in allopolyploid plants. BMC Genomics. 13(1)
[Journal article]Authored by: Lockhart, P.
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Zhong, B., Deusch, O., Goremykin, VV., Penny, D., Biggs, PJ., Atherton, RA., . . . Lockhart, PJ. (2011). Systematic error in seed plant phylogenomics. Genome Biology and Evolution. 3(1), 1340-1348
[Journal article]Authored by: Biggs, P., Lockhart, P.
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Woo, VL., Funke, MM., Smith, JF., Lockhart, PJ., & Garnock-Jones, PJ. (2011). New world origins of southwest pacific gesneriaceae: Multiple movements across and within the south pacific. International Journal of Plant Sciences. 172(3), 434-457
[Journal article]Authored by: Lockhart, P.
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Voelckel, C., Mirzaei, M., Reichelt, M., Luo, Z., Pascovici, D., Heenan, PB., . . . Lockhart, PJ. (2010). Transcript and protein profiling identify candidate gene sets of potential adaptive significance in New Zealand Pachycladon. BMC Evolutionary Biology. 10(1)
[Journal article]Authored by: Lockhart, P.
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Joly, S., Pfeil, BE., Oxelman, B., McLenachan, PA., & Lockhart, PJ. (2010). Erratum: A statistical approach for distinguishing hybridization and incomplete lineage sorting (American Naturalist 174 (E54-E70)). American Naturalist. 175(5), 621-622
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Atherton, RA., McComish, BJ., Shepherd, LD., Berry, LA., Albert, NW., & Lockhart, PJ. (2010). Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform. PLANT METHODS. 6,
[Journal article]Authored by: Lockhart, P.
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Voelckel, C., Mirzaei, M., Reichelt, M., Luo, Z., Pascovici, D., Heenan, PB., . . . Lockhart, PJ. (2010). Transcript and protein profiling identify candidate gene sets of potential adaptive significance in New Zealand Pachycladon. BMC EVOLUTIONARY BIOLOGY. 10,
[Journal article]Authored by: Lockhart, P.
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Singh, SK., Khurma, UR., & Lockhart, PJ. (2010). Weed hosts of root-knot nematodes and their distribution in Fiji. Weed Technology. 24(4), 607-612
[Journal article]Authored by: Lockhart, P.
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Emadzade, K., Lehnebach, C., Lockhart, P., & Hörandl, E. (2010). A molecular phylogeny, morphology and classification of genera of Ranunculeae (Ranunculaceae). Taxon. 59(3), 809-828
[Journal article]Authored by: Lockhart, P.
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Atherton, R., McComish, B., Shepherd, L., Berry, L., Albert, N., & Lockhart, P. (2010). Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform. Plant Methods. 6, 22-27
[Journal article]Authored by: Berry, L., Lockhart, P.
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Sutherland, CJ., Tanomsing, N., Nolder, D., Oguike, M., Jennison, C., Pukrittayakamee, S., . . . Polley, SD. (2010). Two nonrecombining sympatric forms of the human malaria parasite plasmodium ovale occur globally. Journal of Infectious Diseases. 201(10), 1544-1550
[Journal article]Authored by: Lockhart, P.
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Joly, S., McLenachan, PA., & Lockhart, PJ. (2009). A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting. AMERICAN NATURALIST. 174(2), E54-E70
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Meudt, HM., Lockhart, PJ., & Bryant, D. (2009). Species delimitation and phylogeny of a New Zealand plant species radiation. BMC Evolutionary Biology. 9(1)
[Journal article]Authored by: Lockhart, P.
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Meudt, HM., Lockhart, PJ., & Bryant, D. (2009). Species delimitation and phylogeny of a New Zealand plant species radiation. BMC EVOLUTIONARY BIOLOGY. 9,
[Journal article]Authored by: Lockhart, P.
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Joly, S., McLenachan, PA., & Lockhart, PJ. (2009). A statistical approach for distinguishing hybridization and incomplete lineage sorting. American Naturalist. 174(2)
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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Joly, S., Heenan, PB., & Lockhart, PJ. (2009). A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand. Molecular Phylogenetics and Evolution. 51(2), 365-372
[Journal article]Authored by: Lockhart, P.
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Holland, BR., Benthin, S., Lockhart, PJ., Moulton, V., & Huber, KT. (2008). Using supernetworks to distinguish hybridization from lineage-sorting. BMC Evolutionary Biology. 8(1)
[Journal article]Authored by: Lockhart, P.
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Kneip, C., Voß, C., Lockhart, PJ., & Maier, UG. (2008). The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution. BMC Evolutionary Biology. 8(1)
[Journal article]Authored by: Lockhart, P.
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63
Gruenheit, N., Lockhart, PJ., Steel, M., & Martin, W. (2008). Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. Molecular Biology and Evolution. 25(7), 1512-1520
[Journal article]Authored by: Lockhart, P.
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Kneip, C., Voss, C., Lockhart, PJ., & Maier, UG. (2008). The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution. BMC EVOLUTIONARY BIOLOGY. 8,
[Journal article]Authored by: Lockhart, P.
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50
Voelckel, C., Heenan, PB., Janssen, B., Reichelt, M., Ford, K., Hofmann, R., . . . Lockhart, PJ. (2008). Transcriptional and biochemical signatures of divergence in natural populations of two species of New Zealand alpine Pachycladon. Molecular Ecology. 17(21), 4740-4753
[Journal article]Authored by: Lockhart, P.
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20
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Howe, CJ., Barbrook, AC., Nisbet, RER., Lockhart, PJ., & Larkum, AWD. (2008). The origin of plastids. Philosophical Transactions of the Royal Society B: Biological Sciences. 363(1504), 2675-2685
[Journal article]Authored by: Lockhart, P.
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Holland, BR., Benthin, S., Lockhart, PJ., Moulton, V., & Huber, KT. (2008). Using supernetworks to distinguish hybridization from lineage-sorting. BMC EVOLUTIONARY BIOLOGY. 8,
[Journal article]Authored by: Lockhart, P.
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91
Lehnebach, CA., Rivero, M., Ezcurra, C., & Lockhart, PJ. (2007). A new northern limit for the distribution of ranunculus spegazzinii lourteig (ranunculaceae) in Chile. Gayana - Botanica. 64(2), 239-241
[Journal article]Authored by: Lockhart, P.
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Morley, CG., McLenachan, PA., & Lockhart, PJ. (2007). Evidence for the presence of a second species of mongoose in the Fiji Islands. Pacific Conservation Biology. 13(1), 29-34
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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8
Kneip, C., Lockhart, P., Voß, C., & Maier, UG. (2007). Nitrogen fixation in eukaryotes - New models for symbiosis. BMC Evolutionary Biology. 7
[Journal article]Authored by: Lockhart, P.
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113
Whitfield, JB., & Lockhart, PJ. (2007). Deciphering ancient rapid radiations. Trends in Ecology and Evolution. 22(5), 258-265
[Journal article]Authored by: Lockhart, P.
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346
290
Martin, W., Roettger, M., & Lockhart, PJ. (2007). A reality check for alignments and trees. Trends in Genetics. 23(10), 478-480
[Journal article]Authored by: Lockhart, P.
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11
11
Lehnebach, CA., Cano, A., Monsalve, C., McLenachan, P., Hörandl, E., & Lockhart, P. (2007). Phylogenetic relationships of the monotypic Peruvian genus Laccopetalum (Ranunculaceae). Plant Systematics and Evolution. 264(1-2), 109-116
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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23
Larkum, AWD., Lockhart, PJ., & Howe, CJ. (2007). Shopping for plastids. Trends in Plant Science. 12(5), 189-195
[Journal article]Authored by: Lockhart, P.
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134
109
Knapp, M., Mudaliar, R., Havell, D., Wagstaff, SJ., & Lockhart, PJ. (2007). The drowning of New Zealand and the problem of agathis. Systematic Biology. 56(5), 862-870
[Journal article]Authored by: Lockhart, P.
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Heenan, PB., Mitchell, AD., McLenachan, PA., Lockhart, PJ., & de Lange, PJ. (2007). Natural variation and conservation of Lepidium sisymbrioides Hook, f. and L. solandri Kirk (Brassicaceae) in South Island, New Zealand, based on morphological and DNA sequence data. New Zealand Journal of Botany. 45(1), 237-264
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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17
15
Zauner, S., Lockhart, P., Stoebe-Maier, B., Gilson, P., McFadden, GI., & Maier, UG. (2006). Differential gene transfers and gene duplications in primary and secondary endosymbioses. BMC EVOLUTIONARY BIOLOGY. 6
[Journal article]Authored by: Lockhart, P.
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5
Zauner, S., Lockhart, P., Stoebe-Maier, B., Gilson, P., McFadden, GI., & Maier, UG. (2006). Differential gene transfers and gene duplications in primary and secondary endosymbioses. BMC Evolutionary Biology. 6
[Journal article]Authored by: Lockhart, P.
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7
McBreen, K., & Lockhart, PJ. (2006). Reconstructing reticulate evolutionary histories of plants. Trends in Plant Science. 11(8), 398-404
[Journal article]Authored by: Lockhart, P.
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Heenan, PB., Lockhart, PJ., Kirkham, N., McBreen, K., & Havell, D. (2006). Relationships in the alpine Ranunculus haastii (Ranunculaceae) complex and recognition of R. piliferus and R. acraeus from southern New Zealand. New Zealand Journal of Botany. 44(4), 425-441
[Journal article]Authored by: Lockhart, P.
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3
3
Lockhart, P., Novis, P., Milligan, BG., Riden, J., Rambaut, A., & Larkum, T. (2006). Heterotachy and tree building: A case study with plastids and eubacteria. Molecular Biology and Evolution. 23(1), 40-45
[Journal article]Authored by: Lockhart, P.
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72
Knapp, M., Stockler, K., Havell, D., Delsuc, F., Sebastiani, F., & Lockhart, PJ. (2005). Relaxed molecular clock provides evidence for long-distance dispersal of Nothofagus (southern beech). PLOS BIOLOGY. 3(1), 38-43
[Journal article]Authored by: Lockhart, P.
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193
Paun, O., Lehnebach, C., Johansson, JT., Lockhart, P., & Hörandl, E. (2005). Phylogenetic relationships and biogeography of Ranunculus and allied genera (Ranunculaceae) in the Mediterranean region and in the European Alpine System. Taxon. 54(4), 911-930
[Journal article]Authored by: Lockhart, P.
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Lockhart, P., & Steel, M. (2005). A tale of two processes.. Systematic biology. 54(6), 948-951
[Journal article]Authored by: Lockhart, P.
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Winkworth, RC., Wagstaff, SJ., Glenny, D., & Lockhart, PJ. (2005). Evolution of the New Zealand mountain flora: Origins, diversification and dispersal. Organisms Diversity and Evolution. 5(3), 237-247
[Journal article]Authored by: Lockhart, P.
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127
112
Hörandl, E., Paun, O., Johansson, JT., Lehnebach, C., Armstrong, T., Chen, L., . . . Lockhart, P. (2005). Phylogenetic relationships and evolutionary traits in Ranunculus s.l. (Ranunculaceae) inferred from ITS sequence analysis. Molecular Phylogenetics and Evolution. 36(2), 305-327
[Journal article]Authored by: Lockhart, P.
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129
111
Winkworth, RC., Bryant, D., Lockhart, PJ., Havell, D., & Moulton, V. (2005). Biogeographic interpretation of splits graphs: Least squares optimization of branch lengths. Systematic Biology. 54(1), 56-65
[Journal article]Authored by: Lockhart, P.
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26
21
Knapp, M., Stöckler, K., Havell, D., Delsuc, F., Sebastiani, F., & Lockhart, PJ. (2005). Relaxed molecular clock provides evidence for long-distance dispersal of Nothofagus (southern beech). PLoS Biology. 3(1)
[Journal article]Authored by: Lockhart, P.
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206
Lockhart, PJ., & Penny, D. (2005). The place of Amborella within the radiation of angiosperms. Trends in Plant Science. 10(5), 201-202
[Journal article]Authored by: Lockhart, P.
35
35
Prechtl, J., Kneip, C., Lockhart, P., Wenderoth, K., & Maier, UG. (2004). Intracellular spheroid bodies of Rhopalodia gibba have nitrogen-fixing apparatus of cyanobacterial origin. Molecular Biology and Evolution. 21(8), 1477-1481
[Journal article]Authored by: Lockhart, P.
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111
93
Holland, BR., Huber, KT., Moulton, V., & Lockhart, PJ. (2004). Using consensus networks to visualize contradictory evidence for species phylogeny. Molecular Biology and Evolution. 21(7), 1459-1461
[Journal article]Authored by: Lockhart, P.
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146
127
Esser, C., Ahmadinejad, N., Wiegand, C., Rotte, C., Sebastiani, F., Gelius-Dietrich, G., . . . Martin, W. (2004). A genome phylogeny for mitochondria among 伪-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Molecular Biology and Evolution. 21(9), 1643-1660
[Journal article]Authored by: Lockhart, P.
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284
243
Perrie, LR., Brownsey, PJ., Lockhart, PJ., & Large, MF. (2003). Morphological and genetic diversity in the New Zealand fern Polystichum vestitum (Dryopteridaceae), with special reference to the Chatham Islands. New Zealand Journal of Botany. 41(4), 581-602
[Journal article]Authored by: Lockhart, P.
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8
7
Smissen, RD., Breitwieser, I., Ward, JM., McLenachan, PA., & Lockhart, PJ. (2003). Use of ISSR profiles and ITS-sequences to study the biogeography of alpine cushion plants in the genus Raoulia (Asteraceae). Plant Systematics and Evolution. 239(1-2), 79-94
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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23
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Perrie, LR., Brownsey, PJ., Lockhart, PJ., & Large, MF. (2003). Morophological and genetic diversity in the New Zealand fern Polystichum vestitum (Dryopteridaceae). with special reference to the Chatham Islands. New Zealand Journal of Botany. 41(4), 581-602
[Journal article]Authored by: Lockhart, P.
Perrie, LR., Brownsey, PJ., Lockhart, PJ., Brown, EA., & Large, MF. (2003). Biogeography of temperate Australasian Polystichum ferns as inferred from chloroplast sequence and AFLP. Journal of Biogeography. 30(11), 1729-1736
[Journal article]Authored by: Lockhart, P.
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47
46
Kleine, T., Lockhart, P., & Batschauer, A. (2003). An Arabidopsis protein closely related to Synechocystis cryptochrome is targeted to organelles. Plant Journal. 35(1), 93-103
[Journal article]Authored by: Lockhart, P.
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168
Perrie, LR., Brownsey, PJ., Lockhart, PJ., & Large, MF. (2003). Evidence for an allopolyploid complex in New Zealand Polystichum (Dryopteridaceae). New Zealand Journal of Botany. 41(2), 189-215
[Journal article]Authored by: Lockhart, P.
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36
32
McBreen, K., Lockhart, PJ., McLenachan, PA., Scheele, S., & Robertson, AW. (2003). The use of molecular techniques to resolve relationships among traditional weaving cultivars of Phormium. New Zealand Journal of Botany. 41(2), 301-310
[Journal article]Authored by: Lockhart, P., McLenachan, P., Robertson, A.
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12
10
Stöcler, K., Daniel, IL., & Lockhart, PJ. (2002). New Zealand Kauri (Agathis australis (D.Don) Lindl., Araucariaceae) survives Oligocene drowning. Systematic Biology. 51(5), 827-832
[Journal article]Authored by: Lockhart, P.
49
51
Winkworth, RC., Wagstaff, SJ., Glenny, D., & Lockhart, PJ. (2002). Plant dispersal N.E.W.S from New Zealand. Trends in Ecology and Evolution. 17(11), 514-520
[Journal article]Authored by: Lockhart, P.
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177
Winkworth, RC., Grau, J., Robertson, AW., & Lockhart, PJ. (2002). The origins and evolution of the genus Myosotis L. (Boraginaceae). Molecular Phylogenetics and Evolution. 24(2), 180-193
[Journal article]Authored by: Lockhart, P., Robertson, A.
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85
85
McLenachan, PA., Lockhart, PJ., Havell, D., Glenny, D., Huson, D., & Jensen, U. (2001). Phylogeny, radiation, and transoceanic dispersal of New Zealand alpine buttercups: Molecular evidence under split decomposition. Annals of the Missouri Botanical Garden. 88(3), 458-477
[Journal article]Authored by: Lockhart, P., McLenachan, P.
Lockhart, PJ., & Cameron, SA. (2001). Trees for bees. Trends in Ecology and Evolution. 16(2), 84-88
[Journal article]Authored by: Lockhart, P.
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57
53
Lockhart, PJ., McLenachan, PA., Havell, D., Glenny, D., Huson, D., & Jensen, U. (2001). Phylogeny, radiation, and transoceanic dispersal of New Zealand alpine buttercups: Molecular evidence under split decomposition. Annals of the Missouri Botanical Garden. 88(3), 458-477
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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117
Huber, KT., Moulton, V., Lockhart, P., & Dress, A. (2001). Pruned median networks: A technique for reducing the complexity of median networks. Molecular Phylogenetics and Evolution. 19(2), 302-310
[Journal article]Authored by: Lockhart, P.
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21
18
Mclenachan, PA., Stöckler, K., Winkworth, RC., Mcbreen, K., Zauner, S., & Lockhart, PJ. (2000). Markers derived from amplified fragment length polymorphism gels for plant ecology and evolution studies. Molecular Ecology. 9(11), 1899-1903
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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23
Perrie, LR., Lockhart, PJ., Brownsey, PJ., & Large, MF. (2000). Morphological and molecular concordance for the recognition of two species in the New Zealand Polystichum richardii (Hook.) J. Smith complex. Plant Systematics and Evolution. 224(1-2), 97-107
[Journal article]Authored by: Lockhart, P.
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5
5
Steel, M., Huson, D., & Lockhart, PJ. (2000). Invariable sites models and their use in phylogeny reconstruction. Systematic Biology. 49(2), 225-232
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Huson, D., Maier, U., Fraunholz, MJ., Van De Peer, Y., Barbrook, AC., . . . Steel, MA. (2000). How molecules evolve in eubacteria [3]. Molecular Biology and Evolution. 17(5), 835-838
[Journal article]Authored by: Lockhart, P.
41
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Howe, CJ., Barbrook, AC., & Lockhart, PJ. (2000). Organelle genes - Do they jump or are they pushed?. Trends in Genetics. 16(2), 65-66
[Journal article]Authored by: Lockhart, P.
14
14
Hickson, RE., Slack, KE., & Lockhart, P. (2000). Phylogeny recapitulates geography, or why New Zealand has so many species of skinks. Biological Journal of the Linnean Society. 70(3), 415-433
[Journal article]Authored by: Lockhart, P.
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41
35
Wägele, JW., Erikson, T., Lockhart, P., & Misof, B. (1999). The Ecdysozoa: Artifact or monophylum?. Journal of Zoological Systematics and Evolutionary Research. 37(4), 211-223
[Journal article]Authored by: Lockhart, P.
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65
62
Winkworth, RC., Robertson, AW., Ehrendorfer, F., & Lockhart, PJ. (1999). The importance of dispersal and recent speciation in the flora of New Zealand. Journal of Biogeography. 26(6), 1323-1325
[Journal article]Authored by: Lockhart, P., Robertson, A.
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45
46
Hurr, KA., Lockhart, PJ., Heenan, PB., & Penny, D. (1999). Evidence for the recent dispersal of Sophora (Leguminosae) around the Southern Oceans: Molecular data. Journal of Biogeography. 26(3), 565-577
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Howe, CJ., Barbrook, AC., Larkum, AWD., & Penny, D. (1999). Spectral analysis, systematic bias, and the evolution of chloroplasts [3]. Molecular Biology and Evolution. 16(4), 573-576
[Journal article]Authored by: Lockhart, P.
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45
43
Barbrook, AC., Lockhart, PJ., & Howe, CJ. (1998). Phylogenetic analysis of plastid origins based on secA sequences. Current Genetics. 34(4), 336-341
[Journal article]Authored by: Lockhart, P.
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14
16
Lockhart, PJ., Steel, MA., Barbrook, AC., Huson, DH., Charleston, MA., & Howe, CJ. (1998). A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages. Molecular Biology and Evolution. 15(9), 1183-1188
[Journal article]Authored by: Lockhart, P.
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Sivakumaran, S., Lockhart, PJ., & Jarvis, BDW. (1997). Identification of soil bacteria expressing a symbiotic plasmid from Rhizobium leguminosarum bv. trofolii. Canadian Journal of Microbiology. 43(2), 164-177
[Journal article]Authored by: Lockhart, P.
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8
7
Lockhart, PJ., Steel, MA., & Larkum, AWD. (1996). Erratum: Gene duplication and the evolution of photosynthetic reaction center proteins (FEBS 16994) (FEBS Letters 385 (1996) 193-196). FEBS Letters. 390(2), 242
[Journal article]Authored by: Lockhart, P.
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1
Lockhart, PJ., Steel, MA., & Larkum, AWD. (1996). Gene duplication and the evolution of photosynthetic reaction center proteins. FEBS Letters. 385(3), 193-196
[Journal article]Authored by: Lockhart, P.
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14
13
Leung, E., Print, CG., Parry, DAD., Closey, DN., Lockhart, PJ., Skinner, SJM., . . . Krissansen, GW. (1996). Cloning of novel kinectin splice variants with alternative C-termini: Structure, distribution and evolution of mouse kinectin. Immunology and Cell Biology. 74(5), 421-433
[Journal article]Authored by: Lockhart, P.
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24
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Penny, D., Hendy, MD., Lockhart, PJ., & Steel, MA. (1996). Corrected parsimony, minimum evolution, and Hadamard conjugations. Systematic Biology. 45(4), 596-606
[Journal article]Authored by: Lockhart, P.
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25
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Lockhart, PJ., Larkum, AWD., Steel, MA., Waddell, PJ., & Penny, D. (1996). Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis. Proceedings of the National Academy of Sciences of the United States of America. 93(5), 1930-1934
[Journal article]Authored by: Lockhart, P.
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McLenachan, PA., Lockhart, PJ., Faber, HR., & Mansfield, BC. (1996). Evolutionary Analysis of the Multigene Pregnancy-Specific 尾<inf>1</inf>-Glycoprotein Family: Separation of Historical and Nonhistorical Signals. Journal of Molecular Evolution. 42(2), 273-280
[Journal article]Authored by: Lockhart, P., McLenachan, P.
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12
12
Lockhart, PJ., Penny, D., & Meyer, A. (1995). Testing the phylogeny of swordtail fishes using split decomposition and spectral analysis. Journal of Molecular Evolution. 41(5), 666-674
[Journal article]Authored by: Lockhart, P.
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Steel, M., Lockhart, PJ., & Penny, D. (1995). A Frequency-Dependent Significance Test for Parsimony. Molecular Phylogenetics and Evolution. 4(1), 64-71
[Journal article]Authored by: Lockhart, P.
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17
Lockhart, PJ., Steel, MA., Hendy, MD., & Penny, D. (1994). Recovering evolutionary trees under a more realistic model of sequence evolution. Molecular Biology and Evolution. 11(4), 605-612
[Journal article]Authored by: Lockhart, P.
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856
830
Steel, MA., Lockhart, PJ., & Penny, D. (1993). Confidence in evolutionary trees from biological sequence data. Nature. 364(6436), 440-442
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Penny, D., Hendy, MD., & Larkum, ADW. (1993). Is Prochlorothrix hollandica the best choice as a prokaryotic model for higher plant Chl a/b photosynthesis?. Photosynthesis Research. 37(1), 61-68
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Beanlandi, TJ., Howe, CJ., & Larkum, AWD. (1992). Sequence of Prochloron didemni atpBE and the inference of chloroplast origins. Proceedings of the National Academy of Sciences of the United States of America. 89(7), 2742-2746
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Howe, CJ., Bryant, DA., Beanland, TJ., & Larkum, AWD. (1992). Substitutional bias confounds inference of cyanelle origins from sequence data. Journal of Molecular Evolution. 34(2), 153-162
[Journal article]Authored by: Lockhart, P.
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150
147
Howe, CJ., Beanland, TJ., Larkum, AWD., & Lockhart, PJ. (1992). Plastid origins. Trends in Ecology and Evolution. 7(11), 378-383
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Penny, D., Hendy, MD., Howe, CJ., Beanland, TJ., & Larkum, AWD. (1992). Controversy on chloroplast origins. FEBS Letters. 301(2), 127-131
[Journal article]Authored by: Lockhart, P.
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Lockhart, PJ., Larkum, AWD., Beanland, TJ., & Howe, CJ. (1989). The isolation of high molecular mass DNA from the prochlorophyte Prochloron didemni. FEBS Letters. 248(1-2), 127-130
[Journal article]Authored by: Lockhart, P.
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3
Lockhart, PJ., Larkum, AWD., Beanland, TJ., & Howe, CJ. (1989). The isolation of high molecular mass DNA from the prochlorophyte Prochloron didemni. FEBS Letters. 248(1-2), 127-130
[Journal article]Authored by: Lockhart, P.
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Book

Collins, LJ., & Lockhart, PJ. (2008). Evolutionary properties of sequences and ancestral state reconstruction. In Ancestral Sequence Reconstruction.
[Chapter]Authored by: Lockhart, P.
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Collins, LJ., & Lockhart, PJ. (2008). Evolutionary properties of sequences and ancestral state reconstruction.
[Chapter]Authored by: Lockhart, P.
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Lockhart, PJ. (1998). Evolutionary relationships among protozoa. In GH. Coombs, K. Vickerman, MA. Sleigh, & A. Warren (Eds.) Evolutionary relationships among protozoa. (pp. 275 - 291). : Kluwer Academic Print on Demand
[Chapter]Authored by: Lockhart, P.
Read Abstract: abstract icon

Conference

Matthews, PJ., Lockhart, PJ., & Ahmed, I.Phylogeography, ethnobotany and linguistics: Issues arising from research on the natural and cultural history of taro, Colocasia esculenta (L) Schott. Man in India. 97 (1)(pp. 353 - 379). 0025-1569.
[Conference]Authored by: Lockhart, P.
Read Abstract: abstract icon
11
Shepherd, L., de lange, P., Heenan, P., Perrie, L., & Lockhart, P. (2010). Relationships, hybridization and phylogeography of Sophora, with a focus on the origins of putative translocated S. chathamica. , 2010 Australian Systematic Botany Society Conference
[Conference Abstract]Authored by: Lockhart, P.
Atherton, R., Lockhart, P., Shepherd, L., & Roskruge, N. (2009, September). Tracing the translocation history of a New Zealand endemic cultivated tree. Presented at 5th International Congress of Ethnobotany (ICEB). Bariloche, Argentina.
[Conference Oral Presentation]Authored by: Lockhart, P., Roskruge, N.
Atherton, R., Lockhart, P., Roskruge, N., de lange, P., & Shepherd, L. (2008). Tracing the domestication history and whakapapa (relationships) of cultivated New Zealand plants using DNA markers. , 11th Annual Molecular Ecology Meeting
[Conference Abstract]Authored by: Lockhart, P., Roskruge, N.
Schliep, K., Lockhart, PJ., & Nisbet, E. (2008). The effect on phylogeny of lineage specific structural and functional constraints. In Proceedings of the New Zealand Phylogenetics Conference 2008(pp. 16).
[Conference Abstract]Authored by: Lockhart, P.

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Joly, S., Heenan, P., & Lockhart, PJ. (2008). Deciphering the rapid species radiation of the New Zealand alpine rockcress (Pachycladon) species. In New Zealand Phylogenetics Conference 2008(pp. 12).
[Conference Abstract]Authored by: Lockhart, P.
Gruenheit, N., Lockhart, PJ., Steel, M., & Martin, W. (2008). Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. In Proceedings of the New Zealand Phylogenetics Conference 2008(pp. 13).
[Conference Abstract]Authored by: Lockhart, P.
Lockhart, PJ. (2008, February). Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. Presented at New Zealand Phylogenetics Conference 2008. Whitianga, NZ.
[Conference Oral Presentation]Authored by: Lockhart, P.
Larkum, A., Lockhart, P., & Howe, C.The origin of plastids: A shopping bag model. PHOTOSYNTHESIS RESEARCH. 91 (2-3)(pp. 272 - 272). 0166-8595.
[Conference]Authored by: Lockhart, P.
Huson, DH., Klöpper, T., Lockhart, PJ., & Steel, MA. (2005). Reconstruction of reticulate networks from gene trees. Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). Vol. 3500 (pp. 233 - 249).
[Conference Paper in Published Proceedings]Authored by: Lockhart, P.
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99
84
Holland, BR., Howarth, D., Huber, KT., Lockhart, PJ., Baum, D., & Moulton, V. (2005). Consensus networks: A tool for studying hybridisation. Poster session presented at the meeting of 17th International Botanical Congress. Austria Centre, Vienna, Austria
[Conference Poster]Authored by: Lockhart, P.
Lockhart, PJ. (2004, July). Some phylogenetic approaches to studying the radiation of alpine Ranunculus in New Zealand. Presented at Phylogenetic Combinatorics and Applications 2004. Uppsala University, Uppsala, Sweden.
[Conference Oral Presentation]Authored by: Lockhart, P.
Howe, CJ., Barbrook, AC., & Lockhart, PJ. (1996). Plastid origins. Photosynthesis: from Light to Biosphere. Vol. Vol I (pp. 939 - 944). : International Photosynthesis Congress
[Conference Paper in Published Proceedings]Authored by: Lockhart, P.
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Penny, D., Watson, EE., Hickson, RE., & Lockhart, PJ.Some recent progress with methods for evolutionary trees. New Zealand Journal of Botany. 31 (3)(pp. 275 - 288). 0028-825X.
[Conference]Authored by: Lockhart, P.
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LOCKHART, P., & PENNY, D.THE PROBLEM OF GC CONTENT, EVOLUTIONARY TREES AND THE ORIGINS OF PHOTOSYNTHETIC ORGANELLES. PHOTOSYNTHESIS RESEARCH. 34 (1)(pp. 96 - 96). 0166-8595.
[Conference]Authored by: Lockhart, P.

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Uncategorised

Winkworth, R., Nelson, BCW., Bellgard, S., Probst, C., McLenachan, P., & Lockhart, P.October
[Preprint]Authored by: Lockhart, P.
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Kapust, N., Nelson-Sathi, S., Schönfeld, B., Hazkani-Covo, E., Bryant, D., Lockhart, P., . . . Martin, W.July
[Preprint]Authored by: Lockhart, P.
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Teaching and Supervision

Contact Supervisor

Summary of Doctoral Supervision

Position Current Completed
Main Supervisor 3 8
Co-supervisor 3 14

Current Doctoral Supervision

Main Supervisor of:

  • Velonika Nikki Falaniko - Doctor of Philosophy
    Community survelliance of freshwater in Oceania, a study in Samoa
  • Angelia Hura - Doctor of Philosophy
    Northland Brown Kiwi Whakapapa
  • Richard Fong - Doctor of Philosophy
    The Dynamics of Drug Resistance Evolution and Diagnosis in Mycobacterium tuberculosis

Co-supervisor of:

  • Megan Addison - Doctor of Philosophy
    Development of CRISPR/Cas-based tools to genetically manipulate rumen methanogens
  • Doris Benig - Doctor of Philosophy
    Predictive Genomic Models for Enhancing Taro Agronomic Traits and Environmental Adaptability in Papua New Guinea
  • Emma Muir - Doctor of Philosophy
    Understanding microalgae self-aggregation for economic and sustainable harvesting.

Completed Doctoral Supervision

Main Supervisor of:

  • 2021 - Sofie Pearson - Doctor of Philosophy
    Detection of loci associated with water-soluble carbohydrate accumulation and environmental adaptation in white clover (Trifolium repens L.)
  • 2016 - Kenneth Sugrim - Doctor of Philosophy
    Commercial and Public Health Applications of DNA Monitoring
  • 2014 - Ibrar Ahmed - Doctor of Philosophy
    Evolutionary dynamics of Taro
  • 2014 - Robin Atherton - Doctor of Philosophy
    Nga Uri o Karaka: An genetic study of karako/kopi in Aotearoa/New Zealand
  • 2013 - Barbara Schoenfeld - Doctor of Philosophy
    The pattern and processes of genome change in endosymbionts old and new
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  • 2008 - Carlos Lehnebach - Doctor of Philosophy
    Phylogenetic affinities, species delimitation and adaptive radiation of New Zealand Ranunculus
  • 2007 - Michael Knapp - Doctor of Philosophy
    Discontinuous distributions of iconic New Zealand plant taxa and their implications for Southern Hemisphere biogeography
  • 2002 - Karen Stockler - Doctor of Philosophy
    Origins and Evolution of the New Zealand Forest Flora: A Molecular Phylogenetic Approach.
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Co-supervisor of:

  • 2023 - Weixuan Ning - Doctor of Philosophy
    Phylogenomics and Evolution of Polyploid Azorella (Apiaceae) in New Zealand
  • 2021 - Malin Undin - Doctor of Philosophy
    Studies of how to improve translocation outcomes of Apteryx mantelli focusing on breeding, hybrids, diversity, and telomeres
  • 2020 - Oiwodu Ehoche - Doctor of Philosophy
    Assessing the Potential of Genomic Selection to Improve Yield and Persistence in White Clover
  • 2020 - Natasha Bansal - Doctor of Philosophy
    Exploring the host-parasite relationship between Brown Kiwi (Apteryx mantelli), kiwi ticks (Ixodes anatis) and kiwi tick-borne haemoparasites
  • 2014 - Saumya Agrawal - Doctor of Philosophy
    Characterisation of the human nucleolar organiser regions
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  • 2013 - Bojian Zhong - Doctor of Philosophy
    Phylogenomics and Plant Evolution
  • 2013 - Rebecca Bloomer - Doctor of Philosophy
    The molecular genetic basis of natural variation in trichome density in Arabidopsis Thaliana
  • 2012 - Kerryn Slack - Doctor of Philosophy
    Avian Phylogeny and & Divergence Times based on Mitogenomic Sequences
  • 2012 - Roger Watkins - Doctor of Philosophy
    The Biogeographym Ecology and Endophyte mycorrhiza of the New Zealand Corybas Alliance (orchidaceae)
  • 2009 - Andrew Clarke - Doctor of Philosophy
    Origins and Dispersal of the Sweet Potato and Bottle Gourd in Oceania: Implications for Prehistoric Human Mobility
  • 2002 - Yu-Hsin Lin - Doctor of Philosophy
    Mammalian Evolution and phylogeny from Complete Mitochondrial Genomes.
  • 2002 - Leon Perrie - Doctor of Philosophy
    Morphological and Genetic Diversity of the Fern Genus #Polystichum# Roth (Dryopteridaceae) in New Zealand.
  • 2001 - Nicole Von Maltzahn - Doctor of Philosophy
    Molecular Typing and Phylogenetic Analysis of #Candida# #albicans# Isolates from Different Patient Populations.
  • 1995 - Sivalingam Sivakumaran - Doctor of Philosophy
    Identification of Soil Bacteria Expressing a Symbiotic Plasmid from #Rhizobium# #leguminosarum# Biovar Trifolii.